PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s940631g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family E2F/DP
Protein Properties Length: 533aa    MW: 60407.8 Da    PI: 9.8157
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s940631g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP77.51.3e-24196261171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        rk+ksL+ll++kf++l+ +++++ v+l+++ak+L    v  +rRRiYDi+NVLe+++++++k+kn+++w+g
  PDK_30s940631g002 196 RKQKSLGLLCSKFVSLYDRVDAESVSLDDAAKRL---GV--ERRRIYDIVNVLESVGVLARKAKNRYSWIG 261
                        79********************************...**..****************************98 PP

2E2F_TDP70.22.5e-22321405171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.........dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                        r+eksL+lltq+f+kl+ ++++++v+l+e+a+ L+ +         +   k+RR+YDi+NVL ++nl+ek     ++k+++rw g
  PDK_30s940631g002 321 RREKSLGLLTQNFVKLFLTTDADTVSLDEAARLLLGDgrnssqmrsNNAAKVRRLYDIANVLCSMNLLEKtqqldTRKPAFRWLG 405
                        689******************************************96668************************99*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF017811.9E-30165IPR002675Ribosomal protein L38e
ProDomPD0103613.0E-27168IPR002675Ribosomal protein L38e
Gene3DG3DSA:1.10.10.107.0E-27192262IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.9E-16195260IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.2E-28196261IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-21197261IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.2E-22318406IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013726.6E-29321405IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.9E-18323405IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.26E-12323406IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005667Cellular Componenttranscription factor complex
GO:0005840Cellular Componentribosome
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
PKQIHEIKDF LLTARRKDAR SIKIKRSKDV VKFKVRCSKY LYTLCVFDSE KADKLKQSLP  60
PDTTIYTLFG YKVEERNERK ETREENRFSH HILSTNAMTT TMRSQCPRSV RIGGDSSLDW  120
VLCSEIFKML WLLEEKEQED DFPSSTLLGI RMQASHLQQE AEIFGPLVLQ RKKSRRMTSL  180
PPPYLESGCR HHTYSRKQKS LGLLCSKFVS LYDRVDAESV SLDDAAKRLG VERRRIYDIV  240
NVLESVGVLA RKAKNRYSWI GFSGIPKALF ELKKVLEDEE DDKLSDQTGD FGDYKLNPAA  300
VDAASSLCSA ACRARSVTDN RREKSLGLLT QNFVKLFLTT DADTVSLDEA ARLLLGDGRN  360
SSQMRSNNAA KVRRLYDIAN VLCSMNLLEK TQQLDTRKPA FRWLGTKGKP KADNDVTVTM  420
PPSTKQWNKR AFGTDITNAD YKRSKLNPPV DKKLSKACLR IDDLKECNLT AQKQLQNSQG  480
GYVFGPFQPD GASKGSGDVE EKGGNKVQDW ESLASSFRPQ YHNQGLLNNS SKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-361953973228Transcription factor E2F8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169175QRKKSRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008793781.10.0PREDICTED: E2F transcription factor-like E2FE isoform X2
SwissprotQ8LSZ45e-89E2FE_ARATH; E2F transcription factor-like E2FE
TrEMBLM0TE121e-144M0TE12_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P02220_0011e-144(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01330.14e-74DP-E2F-like protein 3